IL_3J77_256

3D structure

PDB id

3J77 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.2 Å

Loop

Sequence

GA*UGC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J77_256 not in the Motif Atlas

Geometric match to IL_4LFB_054

Geometric discrepancy: 0.3609

The information below is about IL_4LFB_054

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

3J77|1|2S|G|1565
3J77|1|2S|A|1566
*
3J77|1|2S|U|1572
3J77|1|2S|G|1573
3J77|1|2S|C|1574

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 75

60S ribosomal protein L25

Chain 8S

5.8S ribosomal RNA; 5.8S rRNA