IL_3J78_011
3D structure
- PDB id
- 3J78 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- GUAUAAC*GCUAAUAC
- Length
- 15 nucleotides
- Bulged bases
- 3J78|1|1S|U|170
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J78_011 not in the Motif Atlas
- Homologous match to IL_4V88_394
- Geometric discrepancy: 0.262
- The information below is about IL_4V88_394
- Detailed Annotation
- tWH-tWH-tHW-tHW
- Broad Annotation
- No text annotation
- Motif group
- IL_80604.3
- Basepair signature
- cWW-cWW-tWH-tWH-tHW-L-R-cWW
- Number of instances in this motif group
- 4
Unit IDs
3J78|1|1S|G|143
3J78|1|1S|U|144
3J78|1|1S|A|145
3J78|1|1S|U|146
3J78|1|1S|A|147
3J78|1|1S|A|148
3J78|1|1S|C|149
*
3J78|1|1S|G|165
3J78|1|1S|C|166
3J78|1|1S|U|167
3J78|1|1S|A|168
3J78|1|1S|A|169
3J78|1|1S|U|170
3J78|1|1S|A|171
3J78|1|1S|C|172
Current chains
- Chain 1S
- 18S ribosomal RNA
Nearby chains
- Chain 24
- 40S ribosomal protein S24
- Chain S6
- 40S ribosomal protein S6
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