IL_3J78_013

3D structure

PDB id

3J78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

CGAC*GAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J78_013 not in the Motif Atlas

Homologous match to IL_4V88_396

Geometric discrepancy: 0.3239

The information below is about IL_4V88_396

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

3J78|1|1S|C|186
3J78|1|1S|G|187
3J78|1|1S|A|188
3J78|1|1S|C|189
*
3J78|1|1S|G|196
3J78|1|1S|A|197
3J78|1|1S|A|198
3J78|1|1S|G|199

Current chains

Chain 1S

18S ribosomal RNA

Nearby chains

Chain S8

40S ribosomal protein S8