IL_3J78_041

3D structure

PDB id

3J78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

UGG*CCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J78_041 not in the Motif Atlas

Homologous match to IL_4V88_427

Geometric discrepancy: 0.3495

The information below is about IL_4V88_427

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_70707.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

70

Unit IDs

3J78|1|1S|U|822
3J78|1|1S|G|823
3J78|1|1S|G|824
*
3J78|1|1S|C|848
3J78|1|1S|C|849
3J78|1|1S|A|850

Current chains

Chain 1S

18S ribosomal RNA

Nearby chains

Chain 69

60S ribosomal protein L19