IL_3J78_059

3D structure

PDB id

3J78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

GUC*GUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J78_059 not in the Motif Atlas

Geometric match to IL_4E48_005

Geometric discrepancy: 0.1305

The information below is about IL_4E48_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

3J78|1|1S|G|1213
3J78|1|1S|U|1214
3J78|1|1S|C|1215
*
3J78|1|1S|G|1448
3J78|1|1S|U|1449
3J78|1|1S|U|1450

Current chains

Chain 1S

18S ribosomal RNA

Nearby chains

Chain 10

40S ribosomal protein S10

Chain 29

40S ribosomal protein S29

Chain 31

40S ribosomal protein S31