IL_3J78_064
3D structure
- PDB id
- 3J78 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- UGCAU*AUG
- Length
- 8 nucleotides
- Bulged bases
- 3J78|1|1S|C|1274
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J78_064 not in the Motif Atlas
- Geometric match to IL_4LFB_044
- Geometric discrepancy: 0.2776
- The information below is about IL_4LFB_044
- Detailed Annotation
- Isolated cWS basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_76319.5
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
3J78|1|1S|U|1272
3J78|1|1S|G|1273
3J78|1|1S|C|1274
3J78|1|1S|A|1275
3J78|1|1S|U|1276
*
3J78|1|1S|A|1436
3J78|1|1S|U|1437
3J78|1|1S|G|1438
Current chains
- Chain 1S
- 18S ribosomal RNA
Nearby chains
- Chain 10
- 40S ribosomal protein S10
- Chain 20
- 40S ribosomal protein S20
- Chain 29
- 40S ribosomal protein S29
- Chain MR
- messenger RNA
- Chain S3
- 40S ribosomal protein S3
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