IL_3J78_066

3D structure

PDB id

3J78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

3J78|1|1S|A|1427

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J78_066 not in the Motif Atlas

Homologous match to IL_4V88_452

Geometric discrepancy: 0.3187

The information below is about IL_4V88_452

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

3J78|1|1S|C|1280
3J78|1|1S|G|1281
*
3J78|1|1S|C|1426
3J78|1|1S|A|1427
3J78|1|1S|G|1428

Current chains

Chain 1S

18S ribosomal RNA

Nearby chains

Chain 20

40S ribosomal protein S20

Chain 29

40S ribosomal protein S29

Chain S2

40S ribosomal protein S2

Chain S3

40S ribosomal protein S3