IL_3J78_072
3D structure
- PDB id
- 3J78 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- CUA*UGGAAG
- Length
- 9 nucleotides
- Bulged bases
- 3J78|1|1S|U|1390
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J78_072 not in the Motif Atlas
- Geometric match to IL_4V88_458
- Geometric discrepancy: 0.2324
- The information below is about IL_4V88_458
- Detailed Annotation
- Major groove platform; stack outside cWW
- Broad Annotation
- Major groove platform
- Motif group
- IL_58032.1
- Basepair signature
- cWW-tWH-cWW-L-L-R
- Number of instances in this motif group
- 2
Unit IDs
3J78|1|1S|C|1389
3J78|1|1S|U|1390
3J78|1|1S|A|1391
*
3J78|1|1S|U|1407
3J78|1|1S|G|1408
3J78|1|1S|G|1409
3J78|1|1S|A|1410
3J78|1|1S|A|1411
3J78|1|1S|G|1412
Current chains
- Chain 1S
- 18S ribosomal RNA
Nearby chains
- Chain 16
- 40S ribosomal protein S16
- Chain 17
- 40S ribosomal protein S17
- Chain RC
- Guanine nucleotide-binding protein subunit beta-like protein
- Chain S5
- 40S ribosomal protein S5
Coloring options: