IL_3J78_131

3D structure

PDB id

3J78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

CUUG*CGUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J78_131 not in the Motif Atlas

Geometric match to IL_3WBM_003

Geometric discrepancy: 0.2848

The information below is about IL_3WBM_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

3J78|1|2S|C|1069
3J78|1|2S|U|1070
3J78|1|2S|U|1071
3J78|1|2S|G|1072
*
3J78|1|2S|C|1086
3J78|1|2S|G|1087
3J78|1|2S|U|1088
3J78|1|2S|G|1089

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 71

60S ribosomal protein L21

Chain 79

60S ribosomal protein L29