IL_3J78_138
3D structure
- PDB id
- 3J78 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- GACACCACAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 3J78|1|2S|C|1196
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J78_138 not in the Motif Atlas
- Geometric match to IL_5TBW_052
- Geometric discrepancy: 0.1571
- The information below is about IL_5TBW_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53762.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
3J78|1|2S|G|1194
3J78|1|2S|A|1195
3J78|1|2S|C|1196
3J78|1|2S|A|1197
3J78|1|2S|C|1198
3J78|1|2S|C|1199
3J78|1|2S|A|1200
3J78|1|2S|C|1201
3J78|1|2S|A|1202
3J78|1|2S|A|1203
3J78|1|2S|A|1204
3J78|1|2S|A|1205
*
3J78|1|2S|U|1299
3J78|1|2S|G|1300
3J78|1|2S|A|1301
3J78|1|2S|A|1302
3J78|1|2S|A|1303
3J78|1|2S|A|1304
3J78|1|2S|U|1305
3J78|1|2S|G|1306
3J78|1|2S|G|1307
3J78|1|2S|A|1308
3J78|1|2S|U|1309
3J78|1|2S|G|1310
3J78|1|2S|G|1311
3J78|1|2S|C|1312
3J78|1|2S|G|1313
3J78|1|2S|C|1314
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 5S
- 5S ribosomal RNA; 5S rRNA
- Chain 60
- 60S ribosomal protein L10
- Chain 66
- 60S ribosomal protein L16
- Chain 83
- 60S ribosomal protein L33
- Chain 90
- 60S ribosomal protein L40
- Chain L3
- 60S ribosomal protein L3
- Chain L7
- 60S ribosomal protein L7
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