3D structure

PDB id
3J78 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)
Experimental method
ELECTRON MICROSCOPY
Resolution
6.3 Å

Loop

Sequence
UUAUCA*UCUUAUG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3J78_159 not in the Motif Atlas
Homologous match to IL_5TBW_072
Geometric discrepancy: 0.1754
The information below is about IL_5TBW_072
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_39753.2
Basepair signature
cWW-L-R-tWH-L-R-L-R-L-cWW
Number of instances in this motif group
2

Unit IDs

3J78|1|2S|U|1702
3J78|1|2S|U|1703
3J78|1|2S|A|1704
3J78|1|2S|U|1705
3J78|1|2S|C|1706
3J78|1|2S|A|1707
*
3J78|1|2S|U|1737
3J78|1|2S|C|1738
3J78|1|2S|U|1739
3J78|1|2S|U|1740
3J78|1|2S|A|1741
3J78|1|2S|U|1742
3J78|1|2S|G|1743

Current chains

Chain 2S
25S ribosomal RNA

Nearby chains

Chain 84
60S ribosomal protein L34

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1752 s
Application loaded.