IL_3J78_164
3D structure
- PDB id
- 3J78 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- AGUCGG*CUGU
- Length
- 10 nucleotides
- Bulged bases
- 3J78|1|2S|G|2335
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J78_164 not in the Motif Atlas
- Geometric match to IL_5TBW_077
- Geometric discrepancy: 0.2353
- The information below is about IL_5TBW_077
- Detailed Annotation
- Intercalated tWH
- Broad Annotation
- Intercalated tWH
- Motif group
- IL_06455.1
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 7
Unit IDs
3J78|1|2S|A|1901
3J78|1|2S|G|1902
3J78|1|2S|U|1903
3J78|1|2S|C|1904
3J78|1|2S|G|1905
3J78|1|2S|G|1906
*
3J78|1|2S|C|2333
3J78|1|2S|U|2334
3J78|1|2S|G|2335
3J78|1|2S|U|2336
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 73
- 60S ribosomal protein L23
- Chain L3
- 60S ribosomal protein L3
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