IL_3J78_169
3D structure
- PDB id
- 3J78 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- CGAUGG*UGUUGACG
- Length
- 14 nucleotides
- Bulged bases
- 3J78|1|2S|U|2159, 3J78|1|2S|U|2175, 3J78|1|2S|C|2179
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J78_169 not in the Motif Atlas
- Homologous match to IL_5TBW_083
- Geometric discrepancy: 0.1825
- The information below is about IL_5TBW_083
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_64509.1
- Basepair signature
- cWW-tWW-tWW-tSS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
3J78|1|2S|C|2156
3J78|1|2S|G|2157
3J78|1|2S|A|2158
3J78|1|2S|U|2159
3J78|1|2S|G|2160
3J78|1|2S|G|2161
*
3J78|1|2S|U|2173
3J78|1|2S|G|2174
3J78|1|2S|U|2175
3J78|1|2S|U|2176
3J78|1|2S|G|2177
3J78|1|2S|A|2178
3J78|1|2S|C|2179
3J78|1|2S|G|2180
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 1S
- Small subunit ribosomal RNA; SSU rRNA
- Chain 93
- 60S ribosomal protein L43
- Chain L2
- 60S ribosomal protein L2
Coloring options: