IL_3J78_175

3D structure

PDB id

3J78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

3J78|1|2S|A|2281, 3J78|1|2S|C|2287, 3J78|1|2S|C|2306

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J78_175 not in the Motif Atlas

Homologous match to IL_8C3A_095

Geometric discrepancy: 0.1452

The information below is about IL_8C3A_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

3J78|1|2S|C|2277
3J78|1|2S|C|2278
3J78|1|2S|A|2279
3J78|1|2S|A|2280
3J78|1|2S|A|2281
3J78|1|2S|U|2282
3J78|1|2S|G|2283
3J78|1|2S|C|2284
3J78|1|2S|C|2285
3J78|1|2S|U|2286
3J78|1|2S|C|2287
3J78|1|2S|G|2288
*
3J78|1|2S|C|2304
3J78|1|2S|G|2305
3J78|1|2S|C|2306
3J78|1|2S|G|2307

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 1S

Small subunit ribosomal RNA; SSU rRNA

Chain 91

60S ribosomal protein L41