IL_3J78_186

3D structure

PDB id

3J78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

GGCU*GAUUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J78_186 not in the Motif Atlas

Homologous match to IL_8C3A_111

Geometric discrepancy: 0.2129

The information below is about IL_8C3A_111

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50458.1

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

3J78|1|2S|G|2823
3J78|1|2S|G|2824
3J78|1|2S|C|2825
3J78|1|2S|U|2826
*
3J78|1|2S|G|2863
3J78|1|2S|A|2864
3J78|1|2S|U|2865
3J78|1|2S|U|2866
3J78|1|2S|C|2867

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 60

60S ribosomal protein L10

Chain 79

60S ribosomal protein L29

Chain PT

Transfer RNA; tRNA