IL_3J78_195

3D structure

PDB id

3J78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

3J78|1|2S|A|2971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J78_195 not in the Motif Atlas

Geometric match to IL_2VPL_002

Geometric discrepancy: 0.2396

The information below is about IL_2VPL_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

3J78|1|2S|C|2960
3J78|1|2S|G|2961
*
3J78|1|2S|C|2970
3J78|1|2S|A|2971
3J78|1|2S|G|2972

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain L2

60S ribosomal protein L2

Chain PT

Transfer RNA; tRNA