IL_3J78_238
3D structure
- PDB id
- 3J78 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- UUC*GAGUG
- Length
- 8 nucleotides
- Bulged bases
- 3J78|1|2S|U|240
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J78_238 not in the Motif Atlas
- Geometric match to IL_8C3A_096
- Geometric discrepancy: 0.3463
- The information below is about IL_8C3A_096
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_63450.5
- Basepair signature
- cWW-cHS-cWW-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
3J78|1|2S|U|177
3J78|1|2S|U|178
3J78|1|2S|C|179
*
3J78|1|2S|G|237
3J78|1|2S|A|238
3J78|1|2S|G|239
3J78|1|2S|U|240
3J78|1|2S|G|241
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 63
- 60S ribosomal protein L13
- Chain 85
- 60S ribosomal protein L35
- Chain 87
- 60S ribosomal protein L37
- Chain 8S
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: