IL_3J78_253

3D structure

PDB id

3J78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

UU*AGUG

Length

6 nucleotides

Bulged bases

3J78|1|2S|U|240

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J78_253 not in the Motif Atlas

Geometric match to IL_5J7L_393

Geometric discrepancy: 0.3392

The information below is about IL_5J7L_393

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_07039.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

3J78|1|2S|U|177
3J78|1|2S|U|178
*
3J78|1|2S|A|238
3J78|1|2S|G|239
3J78|1|2S|U|240
3J78|1|2S|G|241

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 63

60S ribosomal protein L13

Chain 85

60S ribosomal protein L35

Chain 87

60S ribosomal protein L37