IL_3J78_255

3D structure

PDB id

3J78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

GG*UUUC

Length

6 nucleotides

Bulged bases

3J78|1|2S|U|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J78_255 not in the Motif Atlas

Homologous match to IL_8P9A_293

Geometric discrepancy: 0.3999

The information below is about IL_8P9A_293

Detailed Annotation

Major groove platform related

Broad Annotation

Major groove platform related

Motif group

IL_48076.6

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

3J78|1|2S|G|1623
3J78|1|2S|G|1624
*
3J78|1|2S|U|1819
3J78|1|2S|U|1820
3J78|1|2S|U|1821
3J78|1|2S|C|1822

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 84

60S ribosomal protein L34

Chain 88

60S ribosomal protein L38