3D structure

PDB id
3J79 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GUAC*GCAAUUAAAUAGUAC
Length
19 nucleotides
Bulged bases
3J79|1|A|C|400, 3J79|1|A|U|408, 3J79|1|A|A|412
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_89046.1
Basepair signature
cWW-tSS-L-R-tSH-tWH-tSH-R-R-cWS-cWW
Number of instances in this motif group
2

Unit IDs

3J79|1|A|G|385
3J79|1|A|U|386
3J79|1|A|A|387
3J79|1|A|C|388
*
3J79|1|A|G|399
3J79|1|A|C|400
3J79|1|A|A|401
3J79|1|A|A|402
3J79|1|A|U|403
3J79|1|A|U|404
3J79|1|A|A|405
3J79|1|A|A|406
3J79|1|A|A|407
3J79|1|A|U|408
3J79|1|A|A|409
3J79|1|A|G|410
3J79|1|A|U|411
3J79|1|A|A|412
3J79|1|A|C|413

Current chains

Chain A
28S ribosomal RNA

Nearby chains

Chain C
5.8S ribosomal RNA; 5.8S rRNA
Chain W
60S ribosomal protein uL22
Chain Z
60S ribosomal protein uL24
Chain e
60S ribosomal protein eL39

Coloring options:

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