Motif IL_89046.1 Version IL_89046.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 1-14 | 1-16 | 2-6 | 3-6 | 4-5 | 7-14 | 8-12 | 9-13 | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3J79_014 | 3J79 | 0.0000 | 3 | A | LSU rRNA | G | 385 | U | 386 | A | 387 | C | 388 | * | G | 399 | A | 401 | A | 402 | U | 403 | U | 404 | A | 405 | A | 406 | A | 407 | A | 409 | G | 410 | U | 411 | C | 413 | tSS | cWW | cWS | cWW | tWH | ntSH | ||
| 2 | IL_3J7P_016 | 3J7P | 0.4030 | 2 | 5 | LSU rRNA | G | 387 | A | 388 | A | 389 | C | 390 | * | G | 401 | A | 402 | G | 403 | U | 404 | U | 405 | C | 406 | A | 407 | A | 408 | A | 410 | G | 411 | G | 412 | C | 414 | cWW | cSW | tHS | cWW | cWB |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUAC*GCAAUUAAAUAGUAC | 1 |
| GAAC*GAGUUCAAGAGGGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UA*CAAUUAAAUAGUA | 1 |
| AA*AGUUCAAGAGGG | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-tSS-L-R-tSH-tWH-tSH-R-R-cWS-cWW
- Heat map statistics
- Min 0.40 | Avg 0.20 | Max 0.40
Coloring options: