IL_3J79_025
3D structure
- PDB id
- 3J79 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AGAUUUG*CUUUGCAU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_90248.1
- Basepair signature
- cWW-tSH-cSH-tHS-cHW-cWW-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
3J79|1|A|A|827
3J79|1|A|G|828
3J79|1|A|A|829
3J79|1|A|U|830
3J79|1|A|U|831
3J79|1|A|U|832
3J79|1|A|G|833
*
3J79|1|A|C|861
3J79|1|A|U|862
3J79|1|A|U|863
3J79|1|A|U|864
3J79|1|A|G|865
3J79|1|A|C|866
3J79|1|A|A|867
3J79|1|A|U|868
Current chains
- Chain A
- 28S ribosomal RNA
Nearby chains
- Chain 4
- 60S ribosomal protein eL29
- Chain S
- 60S ribosomal protein eL18
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