IL_3J79_057

3D structure

PDB id

3J79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGUUGAAG*UGGAA

Length

13 nucleotides

Bulged bases

3J79|1|A|U|1539

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02471.1

Basepair signature

cWW-tSS-L-tSH-tSS-tHS-tHS-cWW

Number of instances in this motif group

41

Unit IDs

3J79|1|A|U|1536
3J79|1|A|G|1537
3J79|1|A|U|1538
3J79|1|A|U|1539
3J79|1|A|G|1540
3J79|1|A|A|1541
3J79|1|A|A|1542
3J79|1|A|G|1543
*
3J79|1|A|U|1563
3J79|1|A|G|1564
3J79|1|A|G|1565
3J79|1|A|A|1566
3J79|1|A|A|1567

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain 2

60S ribosomal protein eL28

Chain 8

60S ribosomal protein eL32

Chain C

5.8S ribosomal RNA; 5.8S rRNA

Chain F

60S ribosomal protein uL4

Chain Z

60S ribosomal protein uL24