IL_3J79_077

3D structure

PDB id

3J79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGUAAC*GGAAAAG

Length

13 nucleotides

Bulged bases

3J79|1|A|A|2199

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_95863.1

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

3J79|1|A|C|2186
3J79|1|A|G|2187
3J79|1|A|U|2188
3J79|1|A|A|2189
3J79|1|A|A|2190
3J79|1|A|C|2191
*
3J79|1|A|G|2196
3J79|1|A|G|2197
3J79|1|A|A|2198
3J79|1|A|A|2199
3J79|1|A|A|2200
3J79|1|A|A|2201
3J79|1|A|G|2202

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain T

60S ribosomal protein eL19

Chain g

60S ribosomal protein eL41

Chain h

60S ribosomal protein eL43