IL_3J79_105
3D structure
- PDB id
- 3J79 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CUC*GUGAG
- Length
- 8 nucleotides
- Bulged bases
- 3J79|1|A|G|3304, 3J79|1|A|A|3305
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J79_105 not in the Motif Atlas
- Geometric match to IL_5TBW_108
- Geometric discrepancy: 0.0981
- The information below is about IL_5TBW_108
- Detailed Annotation
- Isolated non-canonical cWW with bulges
- Broad Annotation
- Isolated non-canonical cWW with bulges
- Motif group
- IL_54650.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
3J79|1|A|C|3238
3J79|1|A|U|3239
3J79|1|A|C|3240
*
3J79|1|A|G|3302
3J79|1|A|U|3303
3J79|1|A|G|3304
3J79|1|A|A|3305
3J79|1|A|G|3306
Current chains
- Chain A
- 28S ribosomal RNA
Nearby chains
- Chain E
- 60S ribosomal protein uL3
- Chain M
- 60S ribosomal protein uL14
Coloring options: