IL_3J79_111
3D structure
- PDB id
- 3J79 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UGAC*GAUUAAA
- Length
- 11 nucleotides
- Bulged bases
- 3J79|1|A|U|3526, 3J79|1|A|U|3527, 3J79|1|A|A|3529
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_75779.1
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 55
Unit IDs
3J79|1|A|U|3390
3J79|1|A|G|3391
3J79|1|A|A|3392
3J79|1|A|C|3393
*
3J79|1|A|G|3524
3J79|1|A|A|3525
3J79|1|A|U|3526
3J79|1|A|U|3527
3J79|1|A|A|3528
3J79|1|A|A|3529
3J79|1|A|A|3530
Current chains
- Chain A
- 28S ribosomal RNA
Nearby chains
- Chain E
- 60S ribosomal protein uL3
- Chain K
- 60S ribosomal protein uL13
Coloring options: