IL_3J79_118
3D structure
- PDB id
- 3J79 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UUUGCUAAU*AA
- Length
- 11 nucleotides
- Bulged bases
- 3J79|1|A|U|3555
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J79_118 not in the Motif Atlas
- Geometric match to IL_1R3E_001
- Geometric discrepancy: 0.169
- The information below is about IL_1R3E_001
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_84476.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 13
Unit IDs
3J79|1|A|U|3554
3J79|1|A|U|3555
3J79|1|A|U|3567
3J79|1|A|G|3568
3J79|1|A|C|3569
3J79|1|A|U|3570
3J79|1|A|A|3571
3J79|1|A|A|3572
3J79|1|A|U|3573
*
3J79|1|A|A|3674
3J79|1|A|A|3675
Current chains
- Chain A
- 28S ribosomal RNA
Nearby chains
- Chain 9
- 60S ribosomal protein eL33
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain W
- 60S ribosomal protein uL22
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