IL_3J79_132

3D structure

PDB id

3J79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUCCC*GAACU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J79_132 not in the Motif Atlas

Geometric match to IL_7RQB_114

Geometric discrepancy: 0.095

The information below is about IL_7RQB_114

Detailed Annotation

Symmetric double minor groove platform

Broad Annotation

No text annotation

Motif group

IL_58103.6

Basepair signature

cWW-cWS-L-tSW-L-cWW

Number of instances in this motif group

8

Unit IDs

3J79|1|B|A|32
3J79|1|B|U|33
3J79|1|B|C|34
3J79|1|B|C|35
3J79|1|B|C|36
*
3J79|1|B|G|41
3J79|1|B|A|42
3J79|1|B|A|43
3J79|1|B|C|44
3J79|1|B|U|45

Current chains

Chain B

5S ribosomal RNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain G

60S ribosomal protein uL5

Chain R

60S ribosomal protein uL18