IL_3J79_133
3D structure
- PDB id
- 3J79 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GCUAGUAC*GGAACAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J79_133 not in the Motif Atlas
- Homologous match to IL_5TBW_377
- Geometric discrepancy: 0.2222
- The information below is about IL_5TBW_377
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
3J79|1|B|G|71
3J79|1|B|C|72
3J79|1|B|U|73
3J79|1|B|A|74
3J79|1|B|G|75
3J79|1|B|U|76
3J79|1|B|A|77
3J79|1|B|C|78
*
3J79|1|B|G|98
3J79|1|B|G|99
3J79|1|B|A|100
3J79|1|B|A|101
3J79|1|B|C|102
3J79|1|B|A|103
3J79|1|B|C|104
Current chains
- Chain B
- 5S ribosomal RNA
Nearby chains
- Chain 5
- 60S ribosomal protein uL30
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain Q
- 60S ribosomal protein uL16
- Chain R
- 60S ribosomal protein uL18
- Chain U
- 60S ribosomal protein eL20
- Chain V
- 60S ribosomal protein eL21
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