IL_3J79_140

3D structure

PDB id

3J79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUG*CAUU

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J79_140 not in the Motif Atlas

Geometric match to IL_8C3A_070

Geometric discrepancy: 0.3026

The information below is about IL_8C3A_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15698.1

Basepair signature

cWW-tSH-cSH-cWW

Number of instances in this motif group

9

Unit IDs

3J79|1|A|A|173
3J79|1|A|U|174
3J79|1|A|G|175
*
3J79|1|A|C|255
3J79|1|A|A|256
3J79|1|A|U|257
3J79|1|A|U|258

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain 3

60S ribosomal protein uL29

Chain L

60S ribosomal protein eL13