IL_3J79_142

3D structure

PDB id

3J79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAG*CUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J79_142 not in the Motif Atlas

Geometric match to IL_3D0M_001

Geometric discrepancy: 0.182

The information below is about IL_3D0M_001

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

3J79|1|A|G|444
3J79|1|A|A|445
3J79|1|A|G|446
*
3J79|1|A|C|701
3J79|1|A|U|702
3J79|1|A|U|703

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain 8

60S ribosomal protein eL32

Chain 9

60S ribosomal protein eL33

Chain C

5.8S ribosomal RNA; 5.8S rRNA