IL_3J79_154
3D structure
- PDB id
- 3J79 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUG*CUUAUC
- Length
- 9 nucleotides
- Bulged bases
- 3J79|1|A|U|3769
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J79_154 not in the Motif Atlas
- Homologous match to IL_8P9A_359
- Geometric discrepancy: 0.1768
- The information below is about IL_8P9A_359
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_43622.1
- Basepair signature
- cWW-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
3J79|1|A|G|3720
3J79|1|A|U|3721
3J79|1|A|G|3722
*
3J79|1|A|C|3765
3J79|1|A|U|3766
3J79|1|A|U|3767
3J79|1|A|A|3768
3J79|1|A|U|3769
3J79|1|A|C|3770
Current chains
- Chain A
- 28S ribosomal RNA
Nearby chains
- Chain 0
- 60S ribosomal protein eL24
- Chain 7
- 60S ribosomal protein eL31
- Chain E
- 60S ribosomal protein uL3
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