IL_3J7P_006

3D structure

PDB id

3J7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUCAGUAA*UGAACAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86124.1

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

32

Unit IDs

3J7P|1|5|C|81
3J7P|1|5|U|82
3J7P|1|5|C|83
3J7P|1|5|A|84
3J7P|1|5|G|85
3J7P|1|5|U|86
3J7P|1|5|A|87
3J7P|1|5|A|88
*
3J7P|1|5|U|96
3J7P|1|5|G|97
3J7P|1|5|A|98
3J7P|1|5|A|99
3J7P|1|5|C|100
3J7P|1|5|A|101
3J7P|1|5|G|102

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain L

Ribosomal protein eL13

Chain N

Ribosomal protein eL15

Chain Q

Ribosomal protein eL18

Chain a

Ribosomal protein uL15

Chain o

Ribosomal protein eL42