IL_3J7P_016

3D structure

PDB id

3J7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAAC*GAGUUCAAGAGGGC

Length

18 nucleotides

Bulged bases

3J7P|1|5|G|409, 3J7P|1|5|G|413

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_89046.1

Basepair signature

cWW-tSS-L-R-tSH-tWH-tSH-R-R-cWS-cWW

Number of instances in this motif group

2

Unit IDs

3J7P|1|5|G|387
3J7P|1|5|A|388
3J7P|1|5|A|389
3J7P|1|5|C|390
*
3J7P|1|5|G|401
3J7P|1|5|A|402
3J7P|1|5|G|403
3J7P|1|5|U|404
3J7P|1|5|U|405
3J7P|1|5|C|406
3J7P|1|5|A|407
3J7P|1|5|A|408
3J7P|1|5|G|409
3J7P|1|5|A|410
3J7P|1|5|G|411
3J7P|1|5|G|412
3J7P|1|5|G|413
3J7P|1|5|C|414

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain P

Ribosomal protein uL22

Chain Y

Ribosomal protein uL24

Chain l

Ribosomal protein eL39