IL_3J7P_183

3D structure

PDB id

3J7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AGGGCAAGUCU*AGCU

Length

15 nucleotides

Bulged bases

3J7P|1|S2|U|607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

116

Unit IDs

3J7P|1|S2|A|599
3J7P|1|S2|G|600
3J7P|1|S2|G|601
3J7P|1|S2|G|602
3J7P|1|S2|C|603
3J7P|1|S2|A|604
3J7P|1|S2|A|605
3J7P|1|S2|G|606
3J7P|1|S2|U|607
3J7P|1|S2|C|608
3J7P|1|S2|U|609
*
3J7P|1|S2|A|634
3J7P|1|S2|G|635
3J7P|1|S2|C|636
3J7P|1|S2|U|637

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SC

Ribosomal protein uS5

Chain SD

Ribosomal protein uS3

Chain SJ

Ribosomal protein uS4

Chain SX

Ribosomal protein uS12

Chain Se

Ribosomal protein eS30