IL_3J7P_203

3D structure

PDB id

3J7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGAAGACG*CGUCGUAG

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_90248.1

Basepair signature

cWW-tSH-cSH-tHS-cHW-cWW-cWW-cWW

Number of instances in this motif group

2

Unit IDs

3J7P|1|S2|C|1047
3J7P|1|S2|G|1048
3J7P|1|S2|A|1049
3J7P|1|S2|A|1050
3J7P|1|S2|G|1051
3J7P|1|S2|A|1052
3J7P|1|S2|C|1053
3J7P|1|S2|G|1054
*
3J7P|1|S2|C|1064
3J7P|1|S2|G|1065
3J7P|1|S2|U|1066
3J7P|1|S2|C|1067
3J7P|1|S2|G|1068
3J7P|1|S2|U|1069
3J7P|1|S2|A|1070
3J7P|1|S2|G|1071

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain A

Ribosomal protein uL2

Chain SO

Ribosomal protein uS11

Chain Sa

Ribosomal protein eS26