3D structure

PDB id
3J7P (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the 80S mammalian ribosome bound to eEF2
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
UGG*UCUGUGA
Length
10 nucleotides
Bulged bases
3J7P|1|S2|U|1494, 3J7P|1|S2|G|1497
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_45928.1
Basepair signature
cWW-bif-R-cWW
Number of instances in this motif group
2

Unit IDs

3J7P|1|S2|U|1333
3J7P|1|S2|G|1334
3J7P|1|S2|G|1335
*
3J7P|1|S2|U|1492
3J7P|1|S2|C|1493
3J7P|1|S2|U|1494
3J7P|1|S2|G|1495
3J7P|1|S2|U|1496
3J7P|1|S2|G|1497
3J7P|1|S2|A|1498

Current chains

Chain S2
18S ribosomal RNA

Nearby chains

Chain SD
Ribosomal protein uS3
Chain SK
Ribosomal protein eS10
Chain SU
Ribosomal protein uS10
Chain Sd
Ribosomal protein uS14

Coloring options:

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