IL_3J7P_239
3D structure
- PDB id
- 3J7P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 80S mammalian ribosome bound to eEF2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GACG*CGCC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J7P_239 not in the Motif Atlas
- Geometric match to IL_1D4R_003
- Geometric discrepancy: 0.1763
- The information below is about IL_1D4R_003
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
3J7P|1|5|G|16
3J7P|1|5|A|17
3J7P|1|5|C|18
3J7P|1|5|G|19
*
3J7P|1|8|C|138
3J7P|1|8|G|139
3J7P|1|8|C|140
3J7P|1|8|C|141
Current chains
- Chain 5
- 28S ribosomal RNA
- Chain 8
- 5.8S ribosomal RNA
Nearby chains
- Chain N
- Ribosomal protein eL15
- Chain X
- Ribosomal protein uL23
- Chain h
- Ribosomal protein uL29
- Chain j
- Ribosomal protein eL37
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