IL_3J7P_288

3D structure

PDB id

3J7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGCC*GAAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J7P_288 not in the Motif Atlas

Homologous match to IL_8P9A_419

Geometric discrepancy: 0.1497

The information below is about IL_8P9A_419

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

3J7P|1|S2|G|928
3J7P|1|S2|G|929
3J7P|1|S2|C|930
3J7P|1|S2|C|931
*
3J7P|1|S2|G|1010
3J7P|1|S2|A|1011
3J7P|1|S2|A|1012
3J7P|1|S2|U|1013

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SB

Ribosomal protein eS1

Chain SN

Ribosomal protein uS15

Chain Sb

Ribosomal protein eS27