3D structure

PDB id
3J7Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the idle mammalian ribosome-Sec61 complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
CCGCU*GGCG
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3J7Q_011 not in the Motif Atlas
Geometric match to IL_1GID_008
Geometric discrepancy: 0.3146
The information below is about IL_1GID_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_85033.1
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
36

Unit IDs

3J7Q|1|5|C|180
3J7Q|1|5|C|181
3J7Q|1|5|G|182
3J7Q|1|5|C|183
3J7Q|1|5|U|184
*
3J7Q|1|5|G|253
3J7Q|1|5|G|254
3J7Q|1|5|C|255
3J7Q|1|5|G|256

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain h
Ribosomal protein uL29

Coloring options:


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