3D structure

PDB id
3J7Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the idle mammalian ribosome-Sec61 complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
GUU*GUCAGC
Length
9 nucleotides
Bulged bases
3J7Q|1|5|G|5049
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3J7Q_145 not in the Motif Atlas
Homologous match to IL_8C3A_138
Geometric discrepancy: 0.3215
The information below is about IL_8C3A_138
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_84428.1
Basepair signature
cWW-cWW-L-cWW-L
Number of instances in this motif group
2

Unit IDs

3J7Q|1|5|G|5000
3J7Q|1|5|U|5001
3J7Q|1|5|U|5002
*
3J7Q|1|5|G|5045
3J7Q|1|5|U|5046
3J7Q|1|5|C|5047
3J7Q|1|5|A|5048
3J7Q|1|5|G|5049
3J7Q|1|5|C|5050

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain B
Ribosomal protein uL3
Chain W
Ribosomal protein eL24
Chain d
Ribosomal protein eL31

Coloring options:


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