IL_8C3A_138

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUA*UUAAGC

Length

9 nucleotides

Bulged bases

8C3A|1|1|G|3342

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84428.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

8C3A|1|1|G|3293
8C3A|1|1|U|3294
8C3A|1|1|A|3295
*
8C3A|1|1|U|3338
8C3A|1|1|U|3339
8C3A|1|1|A|3340
8C3A|1|1|A|3341
8C3A|1|1|G|3342
8C3A|1|1|C|3343

Current chains

Chain 1

25S

Nearby chains

Chain 7

60S ribosomal protein L24-A

Chain AE

60S ribosomal protein L31-B

Chain k

60S ribosomal protein L3