IL_3J7R_199

3D structure

PDB id

3J7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGACCGC*GAGGCC

Length

13 nucleotides

Bulged bases

3J7R|1|S2|C|877

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J7R_199 not in the Motif Atlas

Geometric match to IL_4EYA_005

Geometric discrepancy: 0.3644

The information below is about IL_4EYA_005

Detailed Annotation

Tandem non-canonical cWW pairs with near WC pairs

Broad Annotation

Tandem non-canonical cWW pairs with near WC pairs

Motif group

IL_82292.2

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

3J7R|1|S2|G|873
3J7R|1|S2|G|874
3J7R|1|S2|A|875
3J7R|1|S2|C|876
3J7R|1|S2|C|877
3J7R|1|S2|G|878
3J7R|1|S2|C|879
*
3J7R|1|S2|G|907
3J7R|1|S2|A|908
3J7R|1|S2|G|909
3J7R|1|S2|G|910
3J7R|1|S2|C|911
3J7R|1|S2|C|912

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain R

Ribosomal protein eL19

Chain SH

Ribosomal protein eS7

Chain SL

Ribosomal protein uS17