IL_3J7R_267
3D structure
- PDB id
- 3J7R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the translating mammalian ribosome-Sec61 complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CGCUGC*GCAGGUG
- Length
- 13 nucleotides
- Bulged bases
- 3J7R|1|5|G|2343
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J7R_267 not in the Motif Atlas
- Geometric match to IL_4EYA_005
- Geometric discrepancy: 0.3588
- The information below is about IL_4EYA_005
- Detailed Annotation
- Tandem non-canonical cWW pairs with near WC pairs
- Broad Annotation
- Tandem non-canonical cWW pairs with near WC pairs
- Motif group
- IL_82292.2
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
3J7R|1|5|C|2290
3J7R|1|5|G|2291
3J7R|1|5|C|2292
3J7R|1|5|U|2293
3J7R|1|5|G|2294
3J7R|1|5|C|2295
*
3J7R|1|5|G|2339
3J7R|1|5|C|2340
3J7R|1|5|A|2341
3J7R|1|5|G|2342
3J7R|1|5|G|2343
3J7R|1|5|U|2344
3J7R|1|5|G|2345
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C
- Ribosomal protein uL4
- Chain Q
- Ribosomal protein eL18
- Chain a
- Ribosomal protein uL15
- Chain e
- Ribosomal protein eL32
- Chain r
- Ribosomal protein eL28
Coloring options: