IL_3J7Y_060

3D structure

PDB id

3J7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the large ribosomal subunit from human mitochondria

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCA*UAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J7Y_060 not in the Motif Atlas

Geometric match to IL_4WF9_042

Geometric discrepancy: 0.1142

The information below is about IL_4WF9_042

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

3J7Y|1|B|C|1627
3J7Y|1|B|C|1628
3J7Y|1|B|A|1629
*
3J7Y|1|B|U|1639
3J7Y|1|B|A|1640
3J7Y|1|B|G|1641

Current chains

Chain B

mt-tRNAVal

Nearby chains

Chain 6

mL38

Chain 8

mL40

Chain P

uL18

Chain f

mL48

Chain t

unknown protein