IL_3J7Z_104

3D structure

PDB id

3J7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli 50S subunit with ErmCL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGUUC*GGUAG

Length

10 nucleotides

Bulged bases

3J7Z|1|A|U|2689, 3J7Z|1|A|U|2690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J7Z_104 not in the Motif Atlas

Homologous match to IL_5J7L_348

Geometric discrepancy: 0.09

The information below is about IL_5J7L_348

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

3J7Z|1|A|U|2687
3J7Z|1|A|G|2688
3J7Z|1|A|U|2689
3J7Z|1|A|U|2690
3J7Z|1|A|C|2691
*
3J7Z|1|A|G|2718
3J7Z|1|A|G|2719
3J7Z|1|A|U|2720
3J7Z|1|A|A|2721
3J7Z|1|A|G|2722

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain N

50S ribosomal protein L17

Chain P

50S ribosomal protein L19