IL_3J81_033
3D structure
- PDB id
- 3J81 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of a partial yeast 48S preinitiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 3J81|1|2|A|578, 3J81|1|2|U|580
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J81_033 not in the Motif Atlas
- Homologous match to IL_4V88_415
- Geometric discrepancy: 0.1607
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
3J81|1|2|G|561
3J81|1|2|U|562
3J81|1|2|G|563
3J81|1|2|C|564
3J81|1|2|C|565
3J81|1|2|A|566
3J81|1|2|G|567
*
3J81|1|2|C|574
3J81|1|2|G|575
3J81|1|2|G|576
3J81|1|2|U|577
3J81|1|2|A|578
3J81|1|2|A|579
3J81|1|2|U|580
3J81|1|2|U|581
3J81|1|2|C|582
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain 3
- mRNA
- Chain D
- uS3
- Chain X
- uS12
- Chain e
- eS30
- Chain i
- eIF1A
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