IL_3J81_120

3D structure

PDB id

3J81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of a partial yeast 48S preinitiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UGC*GUUG

Length

7 nucleotides

Bulged bases

3J81|1|2|U|1369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J81_120 not in the Motif Atlas

Geometric match to IL_8P9A_418

Geometric discrepancy: 0.3176

The information below is about IL_8P9A_418

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

3J81|1|2|U|1352
3J81|1|2|G|1353
3J81|1|2|C|1354
*
3J81|1|2|G|1367
3J81|1|2|U|1368
3J81|1|2|U|1369
3J81|1|2|G|1370

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Q

uS9

Chain T

eS19

Chain U

uS10