IL_3J8G_002

3D structure

PDB id

3J8G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Electron cryo-microscopy structure of EngA bound with the 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CGG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J8G_002 not in the Motif Atlas

Geometric match to IL_2ZI0_001

Geometric discrepancy: 0.2853

The information below is about IL_2ZI0_001

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_42997.3

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

20

Unit IDs

3J8G|1|A|C|8
3J8G|1|A|G|9
3J8G|1|A|G|10
*
3J8G|1|A|C|110
3J8G|1|A|U|111
3J8G|1|A|G|112

Current chains

Chain A

5S rRNA

Nearby chains

Chain O

50S ribosomal protein L18

Chain Y

50S ribosomal protein L27