IL_3J8G_024

3D structure

PDB id

3J8G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Electron cryo-microscopy structure of EngA bound with the 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

3J8G|1|B|G|801, 3J8G|1|B|G|805

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J8G_024 not in the Motif Atlas

Homologous match to IL_7RQB_018

Geometric discrepancy: 0.2186

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

3J8G|1|B|G|674
3J8G|1|B|A|675
3J8G|1|B|A|676
3J8G|1|B|A|677
3J8G|1|B|C|678
*
3J8G|1|B|G|799
3J8G|1|B|A|800
3J8G|1|B|G|801
3J8G|1|B|A|802
3J8G|1|B|U|803
3J8G|1|B|A|804
3J8G|1|B|G|805
3J8G|1|B|C|806

Current chains

Chain B

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain L

50S ribosomal protein L15